1. You can try this in the F1 console in game.
    Warning This will remove all of the selected prefab(s) even ones that weren't spawned in manually.

    // Crate Marker
    del assets/prefabs/tools/map/cratemarker.prefab

    // Explosion Marker
    del assets/prefabs/tools/map/explosionmarker.prefab

    // CH47 Marker
    del assets/prefabs/tools/map/ch47marker.prefab
     
  2. And how to create your marker?